All Publications

Cecal microbiome transplantation without antibiotic preconditioning standardizes murine microbiomes.

Finding the right fit: Evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data.

High-resolution differentiation of enteric bacteria in premature infant fecal microbiomes using a novel rRNA amplicon.

Mucosal microbiome in patients with early bowel polyps: Inferences from short-read and long-read 16S rRNA sequencing.

 High-resolution microbiome analysis reveals exclusionary Klebsiella species competition in preterm infants at risk for necrotizing enterocolitis.

 Intestinal dysbiosis as an intraoperative predictor of septic complications: evidence from human surgical cohorts and preclinical models of peritoneal sepsis.

Bone loss is ameliorated by fecal microbiota transplantation through SCFA/GPR41/ IGF1 pathway in sickle cell disease mice. 

Associations between gut microbiota characteristics and non‐motor symptoms following pharmacological and surgical treatments in Parkinson’s disease patients.

Identification of age-associated microbial changes via long-read 16S sequencing.

 Improved DNA extraction and amplification strategy for 16S rRNA gene amplicon-based microbiome studies.

Comparison of Lysis and Amplification Methodologies for Optimal 16S rRNA Gene Profiling for Human and Mouse Microbiome Studies.

Evaluation of 16s Long Read Metabarcoding for Characterizing the Microbiome and Salmonella Contamination of Retail Poultry Meat.

The role of maternal exercise in shaping the offspring gut microbiome.

Analysis of microbial composition and sharing in low-biomass human milk samples: A comparison of DNA isolation and sequencing techniques.

Development of a biomarker signature using grating-coupled fluorescence plasmonic microarray for diagnosis of MIS-C.

MinIONTM nanopore sequencing of skin microbiome 16S and 16S-23S rRNA gene amplicons. 

Fecal microbiome composition and diversity of cryopreserved canine stool at different duration and storage conditions.

Fecal microbiome composition and diversity of cryopreserved canine stool at different duration and storage conditions.

Microbial populations vary between the upper and lower Intus Biosciences 2025 2respiratory tract, but not within biogeographic regions of the lung of healthy horses.

Stability of gastric fluid and fecal microbial populations in healthy horses under pasture and stable conditions.

Microbial community analysis and food safety practice survey-based hazard identification and risk assessment for controlled environment hydroponic/aquaponic farming systems.

Dysbiotic vaginal microbiota induces preterm birth cascade via pathogenic molecules in the vagina.

Maternal anxiety, depression, and stress affects offspring gut microbiome diversity and bifidobacterial abundances. 

Stress and depression-associated shifts in gut microbiota: A pilot study of human pregnancy.

Investigation of the vaginal microbiota of dairy cows through genetic sequencing of short (Illumina) and long (PacBio) reads and associations with gestational status. 

Species-level gut microbiota analysis after antibiotic-induced dysbiosis in horses.

The microbial community dynamics of cocaine sensitization in two behaviorally divergent strains of collaborative cross mice. 

 Chondroitin sulfate supplementation improves clinical outcomes in a murine model of necrotizing enterocolitis.

The assessment of microbiome changes and fecal volatile organic compounds during experimental necrotizing enterocolitis.

 Multi-omics characterization of host-derived Bacillus spp. probiotics for improved growth performance in poultry.

Growth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome.

Interactions between time on diet, antibiotic treatment, and liver abscess development on the fecal microbiome of beef cattle. 

Multiplex polymerase chain reaction for identification of *Escherichia coli*.